Tuning Transcription Factor Availability through Acetylation-Mediated Genomic Redistribution.

Louphrasitthiphol P., Siddaway R., Loffreda A., Pogenberg V., Friedrichsen H., Schepsky A., Zeng Z., Lu M., Strub T., Freter R., Lisle R., Suer E., Thomas B., Schuster-Böckler B., Filippakopoulos P., Middleton M., Lu X., Patton EE., Davidson I., Lambert J-P., Wilmanns M., Steingrímsson E., Mazza D., Goding CR.

It is widely assumed that decreasing transcription factor DNA-binding affinity reduces transcription initiation by diminishing occupancy of sequence-specific regulatory elements. However, in vivo transcription factors find their binding sites while confronted with a large excess of low-affinity degenerate motifs. Here, using the melanoma lineage survival oncogene MITF as a model, we show that low-affinity binding sites act as a competitive reservoir in vivo from which transcription factors are released by mitogen-activated protein kinase (MAPK)-stimulated acetylation to promote increased occupancy of their regulatory elements. Consequently, a low-DNA-binding-affinity acetylation-mimetic MITF mutation supports melanocyte development and drives tumorigenesis, whereas a high-affinity non-acetylatable mutant does not. The results reveal a paradoxical acetylation-mediated molecular clutch that tunes transcription factor availability via genome-wide redistribution and couples BRAF to tumorigenesis. Our results further suggest that p300/CREB-binding protein-mediated transcription factor acetylation may represent a common mechanism to control transcription factor availability.

DOI

10.1016/j.molcel.2020.05.025

Type

Journal article

Publication Date

2020-08-06T00:00:00+00:00

Volume

79

Pages

472 - 487.e10

Keywords

DNA-binding affinity, E-box, MITF, acetylation, bHLH-LZ, melanocyte, melanoma, transcription factor, Acetylation, Amino Acid Sequence, Animals, Binding Sites, Cell Line, Tumor, Conserved Sequence, Enhancer Elements, Genetic, Female, Gene Expression Regulation, Neoplastic, Genome, Heterografts, Humans, Male, Melanocytes, Melanoma, Mice, Mice, Nude, Microphthalmia-Associated Transcription Factor, Nucleotide Motifs, Promoter Regions, Genetic, Protein Binding, Protein Interaction Domains and Motifs, Protein Processing, Post-Translational, Sequence Alignment, Sequence Homology, Amino Acid, Skin Neoplasms, Zebrafish

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